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| Accession | Disease | Description | Year | Source | RNA-Seq | Count | Biomarkers |
| E-MTAB-6699 | Lung Cancer | A microarray meta-dataset of lung cancer | 2018 | Tissue | N | 1612 |
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| E-MTAB-6043 | Lung Cancer | A microarray meta-dataset of non-small cell lung cancer | 2018 | Tissue | N | 1118 |
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| GSE66499 | Lung Cancer | Validation of an Airway Gene Expression Classifier for Lung Cancer in Patients Undergoing Diagnostic Bronchoscopy | 2015 | Tissue | N | 680 |
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| GSE157011 | Lung Cancer | Multi-institutional prospective validation of prognostic mRNA signatures in early stage squamous lung cancer (Alliance) | 2020 | Tissue | N | 484 |
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| GSE68465 | Lung Cancer | caArray_jacob-00182: Gene expression-based survival prediction in lung adenocarcinoma: a multi-site, blinded validation study | 2015 | Tissue | N | 462 |
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| GSE47460 | COPD | Gene expression profiling of chronic lung disease for the Lung Genomics Research Consortium | 2013 | Tissue | N | 429 |
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| GSE42834 | Lungs | Human whole blood microarray study to compare patients with tuberculosis, sarcoidosis, pneumonia, and lung cancer | 2012 | Blood | N | 356 |
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| GSE30219 | Lung Cancer | "Off-context" gene expression in lung cancer identifies a group of metastatic-prone tumors | 2011 | Tissue | N | 307 |
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| GSE12771 | Lung Cancer | Lung cancer prediction | 2008 | Blood | N | 292 |
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| GSE41271 | Lung Cancer | Expression profiling of 275 lung cancer specimens | 2012 | Tissue | N | 275 |
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| GSE83227 | Lung Cancer | caArray_meyer-00191: Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses | 2016 | Tissue | N | 254 |
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| GSE157009 | Lung Cancer | Multi-institutional prospective validation of prognostic mRNA signatures in early stage squamous lung cancer (Alliance) [cohort I] | 2020 | Tissue | N | 249 |
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| GSE31210 | Lung Cancer | Gene expression data for pathological stage I-II lung adenocarcinomas | 2011 | Tissue | N | 246 |
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| GSE157010 | Lung Cancer | Multi-institutional prospective validation of prognostic mRNA signatures in early stage squamous lung cancer (Alliance) [Cohort II] | 2020 | Tissue | N | 235 |
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| E-MTAB-8615 | Lung Cancer | Molecular characterisation of TP53 mutated squamous cell carcinomas of the lung identifies BIRC5 as a putative target for therapy | 2016 | Tissue | N | 209 |
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| GSE50081 | Lung Cancer | Validation of a histology-independent prognostic gene signature for early stage, non-small cell lung cancer including stage IA patients | 2013 | Tissue | N | 181 |
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| GSE42127 | Lung Cancer | Expression data for non-small-cell lung cancer | 2012 | Tissue | N | 176 |
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| GSE75037 | Lung Cancer | Expression profiling of 83 matched pairs of lung adenocarcinomas and non-malignant adjacent tissue | 2015 | Tissue | N | 166 |
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| GSE19188 | Lung Cancer | Expression data for early stage NSCLC | 2009 | Tissue | N | 156 |
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| GSE76925 | COPD | Functional interactors of genomewide association study genes are differentially expressed in severe chronic obstructive pulmonary disease lung tissue | 2016 | Tissue | N | 151 |
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| GSE4573 | Lung Cancer | Gene expression signatures for predicting prognosis of squamous cell lung carcinomas | 2006 | Tissue | N | 130 |
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| GSE19667 | Lungs | Threshold of Biologic Response of the Small Airway Epithelium to Low Levels of Tobacco Smoke | 2009 | Tissue | N | 121 |
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| GSE19804 | Lung Cancer | Genome-wide screening of transcriptional modulation in non-smoking female lung cancer in Taiwan | 2010 | Tissue | N | 120 |
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| GSE43767 | Lung Cancer | Comparison of gene expression profiling of human lung at four developmental stages and lung adenocarcioma | 2013 | Tissue | N | 113 |
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| GSE27553 | Lung Cancer | VALIDATION STUDY TO VERIFY DIAGNOSTIC MARKERS FOR LUNG CANCER IN ENDOBRONCHIAL LINING FLUID | 2011 | Lining Fluid | N | 112 |
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| GSE43346 | Lung Cancer | Normal Lung Tissue (49) ; Adenocarcinoma of the Lung (58) | 2013 | Tissue | N | 107 |
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| GSE10072 | Lung Cancer | Gene expression signature of cigarette smoking and its role in lung adenocarcinoma development and survival | 2008 | Tissue | N | 107 |
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| GSE43131 | Lung Cancer | Genomic copy number aberrations in primary lung squamous cell carcinoma | 2012 | Tissue | N | 100 |
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| GSE28571 | Lung Cancer | Gene Copy Number Aberrations are Associated with Survival in Histological Subgroups of Non-Small Cell Lung Cancer (expression data) | 2011 | Tissue | N | 100 |
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| GSE18842 | Lung Cancer | Gene expression analysis of human lung cancer and control samples | 2009 | Tissue | N | 91 |
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| GSE13933 | Lungs | Trachea Epithelium as a “ Canary” for Cigarette Smoking-induced Biologic Phenotype of Small Airway Epithelium | 2008 | Tissue | N | 87 |
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| GSE79209 | Lungs | Airway epithelial cells from smokers with and without bronchial premalignant lesions | 2016 | Tissue | Y | 82 |
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| GSE12667 | Lung Cancer | Discovery of somatic mutations in lung adenocarcinomas | 2008 | Tissue | N | 75 |
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| GSE10445 | Lung Cancer | MERLION LUNG CANCER STUDY | 2008 | Tissue | N | 72 |
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| GSE12815 | Lung Cancer | PI3K pathway activity in the normal airway of smokers with lung cancer, and in smokers with airway dysplasia | 2008 | Tissue | N | 71 |
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| GSE190266 | Lung Cancer | MEK inhibition overcomes chemoimmunotherapy resistance by inducing CXCL10 in cancer cells [France4] | 2021 | Tissue | Y | 70 |
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| GSE7670 | Lung Cancer | Expression data from Lung cancer | 2007 | Tissue | N | 66 |
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| GSE10245 | Lung Cancer | Gene expression differences between adenocarcinoma and squamous cell carcinoma in human NSCLC | 2008 | Tissue | N | 58 |
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| GSE83213 | Lung Cancer | Gene expression profile of stage I lung adenocarcinoma and matched multi-site non-tumor lung samples | 2016 | Tissue | N | 57 |
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| GSE13168 | Lungs | Effects of glucocorticoids and Protein Kinase A on growth factor- and 1beta- regulated gene | 2008 | Tissue | N | 54 |
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| GSE21933 | Lung Cancer | Gene expression profiles of tumor and paired normal lung tissues from primary non-small cell lung cancer (NSCLC) patients in Taiwan. | 2010 | Tissue | N | 42 |
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| GSE12452 | Nasopharyngeal | mRNA expression profiling of nasopharyngeal carcinoma | 2008 | Tissue | N | 41 |
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| GSE1643 | Lungs | Normal Variance of Gene Expression in the Human Lung | 2004 | Tissue | N | 40 |
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| E-MTAB-11316 | Lung - Smoking | Donor-to-donor variation in gene expression profile of 3D bronchial epithelial cells after cigarette smoke exposure | 2022 | Tissue | N | 36 |
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| GSE190265 | Lung Cancer | MEK inhibition overcomes chemoimmunotherapy resistance by inducing CXCL10 in cancer cells [France3] | 2021 | Tissue | Y | 34 |
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| GSE27489 | Lung Cancer | SCREENING STUDY TO IDENTIFY DIAGNOSTIC MARKERS FOR LUNG CANCER IN ENDOBRONCHIAL LINING FLUID | 2011 | Tissue (Lining Fluid) | N | 30 |
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| GSE53408 | Lungs | Metabolomic heterogeneity of severe pulmonary arterial hypertension | 2013 | Tissue | N | 23 |
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| GSE10799 | Lung Cancer | Gene expression profile of lung tumors | 2008 | Tissue | N | 19 |
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| GSE38792 | Sleep Apnea | Visceral fat trancriptome in obstructive sleep apnea | 2012 | Tissue | N | 18 |
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| GSE10240 | Lungs | Primary Human Bronchial Epithelial Cells (HBEs) Stimulated with IL-22 and IL-17 | 2008 | Tissue | N | 12 |
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| GSE34313 | Lungs | Airway smooth muscle reponse to dexamathasone at 4 and 24 hours | 2011 | Tissue | N | 10 |
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