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| Accession | Disease | Description | Year | Source | RNA-Seq | Count | Biomarkers |
| E-MTAB-6698 | Colon Cancer | A microarray meta-dataset of colorectal cancer | 2019 | Tissue | N | 1566 |
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| GSE73094 | Colon Cancer | Genes in Inflammatory Bowel Disease-Associated Risk Loci Demonstrate Genotype-, Tissue-, and Inflammation-Specific Patterns of Expression in Terminal Ileum and Colon Mucosal Tissue | 2015 | Tissue | Y | 989 |
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| E-MTAB-10089 | Colon Cancer | A merged microarray meta-dataset for studying transcriptome-wide changes during neoplastic progression of colorectal cancer | 2020 | Tissue | N | 705 |
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| GSE81653 | Colon Cancer | Development of complete personalized treatment plans for early stage colorectal cancer patients | 2017 | Tissue | N | 593 |
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| GSE68468 | Colon Cancer | caArray_notte-00422: Molecular Dissection of Colon Cancer | 2015 | Tissue | N | 390 |
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| GSE41258 | Colon Cancer | Expression data from colorectal cancer patients | 2012 | Tissue | N | 378 |
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| GSE44076 | Colon Cancer | Gene expression data from healthy, adjacent normal and tumor colon cells | 2013 | Tissue | N | 246 |
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| GSE17536 | Colon Cancer | Metastasis Gene Expression Profile Predicts Recurrence and Death in Colon Cancer Patients (Moffitt Samples) | 2009 | Tissue | N | 177 |
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| GSE14095 | Colon Cancer | Metastasis Gene Expression Profile Predicts Recurrence and Death in Colon Cancer Patients (Moffitt Samples) | 2009 | Tissue | N | 177 |
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| GSE81980 | Colon Cancer | Expression data from early stage CRC patients' tumors [Affymetrix] | 2016 | Tissue | N | 150 |
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| GSE21510 | Colon Cancer | Clinical Significance of Osteoprotegerin Expression in Human Colorectal Cancer | 2010 | Tissue | N | 148 |
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| GSE20916 | Colon Cancer | Modeling oncogenic signaling in colon tumors by multidirectional analyses of microarray data | 2010 | Tissue | N | 145 |
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| GSE81983 | Colon Cancer | Expression data from early stage CRC patients' tumors [NanoString-Design] | 2016 | Tissue | Y | 144 |
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| GSE83889 | Colon Cancer | Prognosis of Stage III Colorectal Carcinomas with FOLFOX Adjuvant Chemotherapy can be Predicted by Molecular Subtype | 2016 | Tissue | N | 136 |
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| GSE164191 | Colon Cancer | Blood based expression of colorectal cancer and healthy controls | 2021 | Blood | N | 121 |
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| GSE24287 | IBD | Differential early pathogenic changes in human ileal gene expression in Crohn's disease and ulcerative colitis | 2010 | Tissue | N | 99 |
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| GSE33113 | Colon Cancer | AMC colon cancer AJCCII | 2011 | Tissue | N | 96 |
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| GSE37364 | Colon Cancer | Expression data from human colonic biopsy samples (adenoma-carcinoma) | 2012 | Tissue | N | 94 |
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| GSE47756 | Colon Cancer | Tumor-educated circulating monocytes are powerful specific biomarkers for diagnosis of colorectal cancer | 2013 | Blood | N | 93 |
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| GSE9348 | Colon Cancer | Expression data from healthy controls and early stage CRC patient's tumor | 2007 | Tissue | N | 82 |
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| GSE8671 | Colon Cancer | Transcriptome profile of human colorectal adenomas. | 2007 | Tissue | N | 64 |
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| GSE81423 | Colon Cancer | mRNA expression profiles of colorectal liver metastases as a novel biomarker for early recurrence after partial hepatectomy | 2016 | Tissue | N | 63 |
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| GSE23878 | Colon Cancer | Genome Wide Expression Analysis of Middle Eastern Colorectal Cancer Reveals FOXM1 as a Novel Target for Cancer Therapy | 2010 | Tissue | N | 59 |
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| GSE18088 | Colon Cancer | Correlation of molecular profiles and clinical outcome of stage UICC II colon cancer patients | 2009 | Tissue | N | 53 |
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| GSE4183 | Colon Cancer | Inflammation, adenoma and cancer: objective classification of colon biopsy specimens with gene expression signature | 2006 | Tissue | N | 53 |
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| GSE32323 | Colon Cancer | Screening for Epigenetically Masked Genes in Colorectal Cancer using 5-aza-2’-deoxycytidine treatment, Microarray and Gene Expression Profile | 2011 | Tissue | N | 44 |
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| GSE22598 | Colon Cancer | Clinical significance of UNC5B Expression in Colorectal Cancer | 2010 | Tissue | N | 38 |
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| GSE15960 | Colon Cancer | Expression data from human colonic epithelial cells normal (N), adenoma (AD) or colorectal cancer (CRC) tissues | 2009 | Tissue | N | 18 |
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