 |
 |
|
 |
|
Accession |
Disease |
Description |
Year |
Source |
RNA-Seq |
Count |
Biomarkers |
|
GSE68310 |
Viral Infection |
Host transcriptional response to influenza and other acute respiratory viral infections – a prospective cohort study |
2015 |
Blood |
N |
880 |
 |
|
GSE65682 |
Sepsis |
Genome-wide blood transcriptional profiling in critically ill patients - MARS consortium |
2015 |
Blood |
N |
802 |
|
|
GSE144127 |
TB |
Diagnostic performance of transcriptomic signatures for the evaluation of suspected tuberculosis in routine clinical practice |
2020 |
Blood |
N |
628 |
|
|
GSE74817 |
Viral Infection |
Time Course of Adults Vaccinated with Influenza TIV Vaccine 2009-2012 |
2015 |
Blood |
N |
621 |
|
|
GSE47963 |
Viral Infection |
SARS-CoV, SARS-dORF6 and SARS-BatSRBD infection of HAE cultures. |
2013 |
Tissue |
N |
438 |
|
|
GSE163151 |
Viral Infection |
A diagnostic host response biosignature for COVID-19 from RNA profiling of nasal swabs and blood |
2020 |
Nasal Swap |
Y |
404 |
|
|
GSE159785 |
Viral Infection |
Temporal and Spatial Heterogeneity of Host Response to SARS-CoV-2 Pulmonary Infection |
2020 |
Tissue |
Y |
363 |
|
|
GSE65442 |
Viral Infection |
Gene expression analysis of Influenza vaccine response in Young and Old - Year 2 - B and T cells |
2015 |
Blood |
N |
356 |
|
|
GSE63990 |
Respiratory Infection |
Profiling of bacterial respiratory infection, viral respiratory infection, and non-infectious illness |
2014 |
Blood |
N |
280 |
|
|
GSE95584 |
Viral Infection |
Gene expression analysis of Influenza vaccine response in Young and Old - Year 3 - B and T cells |
2017 |
Blood |
N |
236 |
|
|
GSE156063 |
Viral Infection |
Upper airway gene expression differentiates COVID-19 from other acute respiratory illnesses and reveals suppression of innate immune responses by SARS-CoV-2 |
2020 |
Swab |
Y |
234 |
|
|
GSE65440 |
Viral Infection |
Gene expression analysis of Influenza vaccine response in Young and Old - Year 1 - B and T cells |
2015 |
Blood |
N |
215 |
|
|
GSE149601 |
Viral Infection |
A gene locus that controls expression of ACE2 in virus infection |
2020 |
Tissue |
Y |
195 |
 |
|
GSE40012 |
Viral Infection |
Blood transcriptome of human bacterial and influenza A pneumonia |
2012 |
Blood |
N |
190 |
|
|
GSE71766 |
Viral Infection |
A Systems Approach to Understanding Human Rhinovirus and Influenza Virus Infection |
2015 |
Tissue |
N |
186 |
|
|
GSE29429 |
HIV |
Whole Blood Transcriptional Response to Early Acute HIV |
2011 |
Blood |
N |
185 |
|
|
E-MTAB-7581 |
Sepsis |
SRS endotype assignment of septic shock patients from the VANISH randomised trial |
2022 |
Blood |
N |
176 |
|
|
GSE54514 |
Sepsis |
Whole blood transcriptome of survivors and nonsurvivors of sepsis |
2014 |
Blood |
N |
163 |
|
|
GSE47960 |
Viral Infection |
SHAE002: SARS-CoV, SARS-dORF6 and SARS-BatSRBD infection of HAE cultures. |
2013 |
Tissue |
N |
163 |
|
|
GSE47961 |
Viral Infection |
SHAE003: SARS-CoV, SARS-dORF6 and SARS-BatSRBD infection of HAE cultures. |
2013 |
Tissue |
N |
141 |
|
|
GSE47962 |
Viral Infection |
SHAE004: SARS-CoV, SARS-dORF6 and SARS-BatSRBD infection of HAE cultures. |
2013 |
Tissue |
N |
134 |
|
|
GSE157103 |
Viral Infection |
Large-scale Multi-omic Analysis of COVID-19 Severity |
2020 |
Blood |
Y |
126 |
|
|
GSE73408 |
TB |
Blood transcriptional biomarkers for active TB among US patients: A case-control study with systematic cross-classifier evaluation. |
2015 |
Blood |
N |
109 |
|
|
GSE101709 |
Viral Infection |
Gene expression analysis of Influenza vaccine response in Young and Old - Year 4 |
2017 |
Blood |
N |
98 |
|
|
E-MTAB-9719 |
Viral Infection |
Daily transcriptomic profiling of immune response in COVID-19 cases and healthy controls using the NanoString Human Immunology Panel |
2021 |
Blood |
Y |
91 |
|
|
GSE70311 |
Sepsis |
Transcriptomic profiling of the inflammatory response after trauma |
2015 |
Blood |
N |
90 |
|
|
GSE149273 |
Viral Infection |
RV infections in asthmatics increase ACE2 expression and stimulate cytokine pathways implicated in COVID19 |
2020 |
Tissue |
N |
90 |
|
|
GSE71065 |
Viral Infection |
Clinical administration of chloroquine to HIV-infected patients that are untreated or receiving antiretroviral therapy |
2015 |
Blood |
N |
80 |
|
|
GSE101710 |
Viral Infection |
Gene expression analysis of Influenza vaccine response in Young and Old - Year 5 |
2017 |
Blood |
N |
79 |
|
|
GSE151161 |
Viral Infection |
Blocking of the CD80/86 axis as a therapeutic approach to prevent progression to more severe forms of COVID-19 |
2020 |
Blood |
Y |
76 |
 |
|
GSE5972 |
Viral Infection |
Gene expression profiling of patients with severe acute respiratory syndrome (SARS) |
2006 |
Blood |
N |
70 |
|
|
GSE65574 |
Viral Infection |
Human Calu-3 cell transcriptome response to a wild type infectious clone of Middle Eastern Respiratory Syndrome (icMERS) coronavirus and icMERS mutant viruses |
2015 |
Tissue |
N |
64 |
|
|
GSE113209 |
Viral Infection |
Acute viral bronchiolitis (NMS) |
2018 |
Tissue |
Y |
56 |
|
|
GSE81909 |
Viral Infection |
Primary human airway epithelial cell transcriptome response to wild type MERS-CoV (icMERS) |
2016 |
Tissue |
N |
50 |
|
|
GSE72374 |
Viral Infection |
Response of peripheral blood mononuclear cells from young (≤ 45 years old) and old (>60 years old) healthy donors to influenza virus derived peptide stimulation. |
2015 |
Blood |
N |
48 |
|
|
GSE29429 |
HIV |
Whole Blood Transcriptional Response to Early Acute HIV |
2011 |
Blood |
N |
47 |
|
|
GSE50834 |
HIV |
Gene expression analysis of PBMC from HIV and HIV/TB co-infected patients |
2013 |
Blood |
N |
44 |
|
|
GSE50834 |
HIV |
Gene expression analysis of PBMC from HIV and HIV/TB co-infected patients |
2013 |
Blood |
N |
44 |
|
|
GSE19439 |
TB |
Blood Transcriptional Profiles in Active and Latent Tuberculosis UK (Training Set) |
2009 |
Blood |
N |
42 |
|
|
GSE21802 |
Viral Infection |
Hosts responses in critical disease caused by pandemic H1N1 |
2010 |
Blood |
N |
41 |
|
|
GSE150316 |
Viral Infection |
Spectrum of Viral Load and Host Response Seen in Autopsies of SARS-CoV-2 Infected Lungs |
2020 |
Tissue |
Y |
37 |
|
|
GSE30589 |
Viral Infection |
Severe acute respiratory syndrome coronavirus envelope protein regulates cell stress responses and apoptosis |
2011 |
Tissue |
N |
33 |
|
|
E-MTAB-8871 |
Viral Infection |
Transcriptomic analysis of immune response in healthy controls and COVID-19 cases using the NanoString Human Immunology Panel |
2020 |
Blood |
Y |
32 |
|
|
GSE45042 |
Viral Infection |
Cell host-response to infection with novel human coronavirus EMC predict potential antivirals and important differences with SARS-coronavirus. |
2013 |
Tissue |
N |
32 |
|
|
GSE151803 |
Viral Infection |
Identification of Lead Drug Candidates for COVID-19 based on Drug Screening Using Human Pluripotent Stem Cell-Derived Cells/Organoids |
2020 |
Tissue |
Y |
21 |
|
|
GSE147507 |
Viral Infection |
Transcriptional response of human lung epithelial cells to SARS-CoV-2 infection |
2020 |
Tissue |
Y |
20 |
|
|
GSE1739 |
Viral Infection |
SARS |
2004 |
Blood |
N |
14 |
|
|
|
|
|
|
|
|
|